Are there any FASTA headers for UniProtKB?

Are there any FASTA headers for UniProtKB?

The following is a description of FASTA headers for UniProtKB (including alternative isoforms), UniRef, UniParc and archived UniProtKB versions. NCBI’s program formatdb (in particular its -o option) is compatible with the UniProtKB fasta headers.

Which is the first gene name in UniProtKB?

GeneName is the first gene name of the UniProtKB entry. If there is no gene name, OrderedLocusName or ORFname, the GN field is not listed. ProteinExistence is the numerical value describing the evidence for the existence of the protein.

What is the releasenumber for Swiss Prot and UniProt?

ReleaseNumber refers to the release from which the sequence was archived (Swiss-Prot or TrEMBL release numbers for releases prior to the first UniProt release, and both UniProt and Swiss-Prot or TrEMBL release numbers for releases after the first UniProt release). ReleaseDate is the date of the release form which the sequence was archived.

Which is the primary accession number of UniProtKB?

UniqueIdentifier is the primary accession number of the UniProtKB entry. EntryName is the entry name of the UniProtKB entry. ProteinName is the recommended name of the UniProtKB entry as annotated in the RecName field.

Which is NCBI program compatible with UniProtKB headers?

NCBI’s program formatdb (in particular its -o option) is compatible with the UniProtKB fasta headers. db is ‘sp’ for UniProtKB/Swiss-Prot and ‘tr’ for UniProtKB/TrEMBL. UniqueIdentifier is the primary accession number of the UniProtKB entry. EntryName is the entry name of the UniProtKB entry.

Which is the isoform name in UniProtKB entry?

IsoformName is the isoform name as annotated in the ALTERNATIVE PRODUCTS Name field of the UniProtKB entry. ProteinExistence and SequenceVersion do not apply to alternative isoforms ( ProteinExistence is dependent on the number of cDNA sequences, which is not known for individual isoforms).